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Author Topic: Der Beweis ist erbracht: SarsCoV2 verursacht Hirnschäden!  (Read 1150 times)

Thymian

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Der Beweis ist erbracht: SarsCoV2 verursacht Hirnschäden!
« on: December 04, 2022, 12:29:47 PM »

Wir sagen es schon seit Anfang 2020: SarsCoV2 verursacht Hirnschäden.

Bei dem folgenden Zitat muß man den wichtigsten Punkt beachten: Die Bildgebung ist sehr grob und zeigt nur große Schäden. Die Schäden sind auch sehr viel feiner vorhanden, können aber nicht so gut oder zur Zeit noch gar nicht radiologisch erfaßt werden.

Mit anderen Worten: ALLE INFIZIERTEN haben Hirnschäden.  Die Situation ist weitaus dramatischer als bisher zugegeben wurde.


https://deutsch.medscape.com/artikelansicht/4911860#vp_3

[*quote*]
Radiologen finden Anomalien im Gehirn von COVID-19-Patienten

Das Ziel, schweres COVID-19 zu vermeiden, ist wichtiger denn je. Laut einer Studie, die nächste Woche auf der Jahrestagung der Radiological Society of North America vorgestellt wird, haben Forscher per MRT Gehirnveränderungen bei Patienten bis zu 6 Monate nach ihrer Genesung von COVID-19 entdeckt. 

Für diese Studie verwendeten Neurologen eine sensitivitätsgewichtete Bildgebung, um die Auswirkungen von COVID-19 auf das Gehirn zu analysieren. Sie analysierten Bildgebungsdaten von 46 genesenen Patienten und 30 gesunden Kontrollpersonen. Die Bildgebung wurde innerhalb von 6 Monaten nach der Genesung durchgeführt.

Patienten, die sich von COVID-19 erholt hatten, zeigten im Vergleich zu gesunden Kontrollpersonen signifikante Unterschiede im Frontallappen und im Hirnstamm. Teile des linken orbital-inferioren Frontalgyrus (einer Schlüsselregion für Sprache), des rechten orbital-inferioren Frontalgyrus (verbunden mit verschiedenen kognitiven Funktionen) und der angrenzenden Bereiche der weißen Substanz waren betroffen.

Die Forscher fanden auch signifikante Unterschiede in der rechten ventralen Zwischenhirnregion des Hirnstamms. Diese Region ist mit vielen entscheidenden Körperfunktionen verbunden, einschließlich der Koordination mit dem endokrinen System zur Freisetzung von Hormonen, der Weiterleitung sensorischer und motorischer Signale an die Großhirnrinde und der Regulierung des zirkadianen Rhythmus.

„Diese Studie weist auf schwerwiegende Langzeitkomplikationen hin, die durch das Coronavirus verursacht werden können, sogar Monate nach der Genesung von der Infektion“, sagte Sapna S. Mishra vom Indian Institute of Technology in Delhi. „Die vorliegenden Befunde stammen aus dem kleinen zeitlichen Fenster. Die Längsschnittzeitpunkte über ein paar Jahre hinweg werden jedoch Aufschluss darüber geben, ob es dauerhafte Veränderungen gibt.“
[*/quote*]


[Typo in Überschrift behoben, Pangwall]
« Last Edit: July 11, 2024, 08:25:17 PM by Pangwall »
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--------------------------------------- * --------------------------------------- * ---------------------------------------

Löwenzian

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Re: Der Beweis ist erbracht: SarsCoV2 verursacht Hirnschäden!
« Reply #1 on: February 28, 2023, 11:26:30 AM »

Ich wüßte gerne mehr. Die Pressemitteilung ist hier verlinkt:

https://press.rsna.org/pressrelease/2022_resources/2381/abstract.pdf

[*quote*]
RADIOLOGICAL SOCIETY OF NORTH AMERICA
820 JORIE BLVD, OAK BROOK, IL 60523
TEL. 1-630-571-2670 FAX 1-630-571-7837
RSNA.ORG

Susceptibility-Weighted Magnetic Resonance Imaging Highlights Brain Alterations in COVID Survivors

PURPOSE

The purpose of this study was to investigate the effects of COVID-19 on the human brain using susceptibility weighted imaging (SWI). We hypothesized that the COVID recovered subjects have developed alterations in the brain which can be measured through susceptibility differences in various regions of the brain compared to healthy controls (HCs).

METHODS AND MATERIALS

In this study, SWI volumes from 46 (15 females; mean age = 35.09 ± 11.37 years) COVID subjects and 30 (8 females; mean age = 34.67 ± 9.5 years) HCs were included. The COVID patients were imaged within six months of their recovery. In the pre-processing step, we registered the SWI volumes to the Montreal Neurological Institute space, followed by signal intensity normalization. We then performed an unpaired two-sample t-test over the pre-processed volumes of both the groups with age and sex as covariates of no interest. Finally, cluster-based thresholding was applied at a height threshold of punc < 0.01, with family-wise error correction at pFWE < 0.05 for multiple comparisons.

RESULTS

The group analysis showed that COVID recovered subjects had significantly higher susceptibility values in regions of the frontal lobe and brain stem. The clusters obtained in the frontal lobe primarily show differences in the white matter (WM) regions. Portions of left and right orbito-inferior frontal gyrus along with their respective adjacent WM areas constitute the two clusters. We also found a significant cluster in the right ventral diencephalon region of the brain stem.

CONCLUSIONS

Our results highlight group-level effects in COVID recovered patients, showing differences in the WM regions and brain stem. These observations are consistent with results reported in the literature of single-patient case studies of COVID patients on SWI volumes.

CLINICAL RELEVANCE/APPLICATIONS

Our study demonstrates that COVID-19 affects the susceptibility values in different human brain regions. The present research will help the community to understand the impact of the SARS-CoV-2 virus on the human brain.
[*/quote*]


Die Website der Radiologen:

https://www.rsna.org
« Last Edit: July 11, 2024, 08:25:43 PM by Pangwall »
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Löwenzian

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Re: Der Beweis ist erbracht: SarsCoV2 verursacht Hirnschäden!
« Reply #2 on: February 28, 2023, 11:58:48 AM »

Keine Bilder? Nicht mal eines? Das ist nicht gut. Ich habe nach dem Original gesucht. Es gibt eines! Mit Bildern! Das muß die originale Studie sein. Der Name Mishra, von Medscape genannt, taucht als einer der Autoren auf.

In dem PDF sind die Bilder.

https://www.medrxiv.org/content/10.1101/2022.11.21.22282600v1
https://www.medrxiv.org/content/10.1101/2022.11.21.22282600v1.full.pdf

[*quote*]
medRxiv preprint doi: https://doi.org/10.1101/2022.11.21.22282600 ; this version posted November 22, 2022. The copyright
holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license
to display the preprint in perpetuity.
It is made available under a CC-BY-NC-ND 4.0 International license .

Susceptibility-Weighted Magnetic Resonance Imaging Highlights
Brain Alterations in COVID Recovered Patients.

Sapna S Mishra a , Rakibul Hafiz b , Rohit Misra a , Tapan K. Gandhi a,∗ , Alok Prasad c ,
Vidur Mahajan d and Bharat B. Biswal b,∗∗
a Department
of Electrical Engineering, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, 110016, India
of Biomedical Engineering, New Jersey Institute of Technology (NJIT), 323 Dr Martin Luther King Jr Blvd, Newark, 07102, NJ, USA
c Metro Heart and Super-specialty Hospital, Haryana, India
d Mahajan Imaging Center, Hauz Khas, New Delhi, India
b Department
ARTICLE INFO ABSTRACT
Keywords:
COVID-19
Post-COVID symptoms
Long COVID

Susceptibility Weighted Imaging

Fatigue The increasing number of reports of mild to severe psychological, behavioral, and cognitive sequelae in COVID-19 survivors motivates a need for a thorough assessment of the neurological effects of the disease. In this regard, we have conducted a neuroimaging study to understand the neurotropic behavior of the coronavirus. We hypothesize that the COVID recovered subjects have developed alterations in the brain which can be measured through susceptibility differences in various regions of brain when compared to healthy controls (HCs). Hence we performed our investigations on susceptibility weighted imaging (SWI) volumes. Fatigue, being of the most common symptoms of Long COVID has also been studied in this work. SWI volumes of 46 COVID and 30 HCs were included in this study. The COVID patients were imaged within six months of their recovery. We performed unpaired two-sample t-test over the pre-processed SWI volumes of both the groups and multiple linear regression was performed to observe group differences and correlation of fatigue with SWI values. The group analysis showed that COVID recovered subjects had significantly higher susceptibility imaging values in regions of the frontal lobe and the brain stem. The clusters obtained in the frontal lobe primarily show differences in the white matter regions. The COVID group also demonstrated significantly higher fatigue levels than the HC group. The regression analysis on the COVID group yielded clusters in anterior cingulate gyrus and midbrain which exhibited negative correlations with fatigue scores. This study suggests an association of Long COVID with prolonged effects on the brain and also indicates the viability of SWI modality for analysis of post-COVID symptoms.

1. Introduction

Coronaviruses (CoV) are a large family of viruses that cause illnesses ranging from the common cold to more severe diseases such as middle east respiratory syndrome (MERS) and severe acute respiratory syndrome (SARS). A novel coronavirus (nCoV), named severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a strain of coronavirus recently found in humans. In December 2019, the first case of coronavirus disease 2019 (COVID-19) was reported. Since then, the virus has caused a global pandemic claiming over 6.3 million lives worldwide as of June 2022 [1]. Most of these deaths are consequences of the pulmonary complications caused by the coronavirus infection.
However, there has been an increase in reports of the virus attacking the human central nervous system (CNS) [2]. Neurological symptoms and signs like confusion, delirium, headache, loss of memory, and disorder of consciousness have been observed and reported worldwide [3]. Apart from the direct impact of the CNS by the virus, the reported neurological manifestations might be related to pathophysiological mechanisms of para-infections or post-infections.
Moreover, newer studies report the neurological manifestations of coronavirus in those who survive the virus infection [4]. This situation is worrisome considering the large population affected by this pandemic, including over 524 million people worldwide and 42 million in India [1]. The increasing number of reports of mild to severe psychological, behavioral, and cognitive sequelae in the survivors motivates a need for an adequate and thorough assessment of the neurological effects of COVID-19. A neuroimaging-based study to understand the post-COVID effects, also known

∗ Corresponding
author
corresponding author
eez208443@ee.iitd.ac.in (S.S. Mishra); rh298@njit.edu (R. Hafiz); rohit.misra@ee.iitd.ac.in (R. Misra);
tgandhi@ee.iitd.ac.in (T.K. Gandhi); bharat.biswal@njit.edu (B.B. Biswal)
ORCID (s): 0000-0002-5304-7131 (S.S. Mishra); 0000-0001-6416-0490 (R. Hafiz)
∗∗ Principal
Mishra et al.: Preprint submitted to Elsevier
Page 1 of 11medRxiv preprint doi: https://doi.org/10.1101/2022.11.21.22282600 ; this version posted November 22, 2022. The copyright
holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license
to display the preprint in perpetuity.
It is made available under a CC-BY-NC-ND 4.0 International license .

SWI Analysis of COVID-19

as Long COVID, can aid the research community to determine the neurotropic behavior of coronavirus and detect the brain regions being affected directly or indirectly by the virus.
Susceptibility weighted imaging (SWI) combines the phase and the magnitude information obtained from magnetic resonance imaging [5]. The three-dimensional high-resolution gradient echo (GRE) sequence used in the SWI modality enables it to utilize the phase data. When combined in a specific manner with these phase data the magnitude data yields SWI volumes. This fully flow-compensated MR imaging technique employs long echo time and short flip angles. It exploits magnitude susceptibility differences of various compounds, such as blood, paramagnetic iron, and diamagnetic calcium, present in different brain tissue types [6]. Thus SWI technique is useful in detecting several pathologies and conditions such as microhemorrhages, cerebral microbleeds, vascular malformations, trauma, and multiple sclerosis [5, 7, 8, 9].

Neurological effects of COVID-19 can be inferred from several symptoms, including loss of smell and taste, brain fog, and headaches [3]. Some people have complained about debilitating fatigue, loss of memory, and difficulty concentrating. In early research on the effects of COVID-19 on the brain, in-depth examinations were carried out on human brain tissues of patients who died after COVID contamination [10, 11]. A study by Lee and colleagues [10] found signs of inflammation and unusually bright and dark spots in the brain’s olfactory bulb, but it also reports no presence of SARS-CoV-2 in the brain. On the other hand, the work by Song and colleagues [11] suggests that the virus may directly infect the human CNS as the authors detected the presence of the virus in the brain’s cerebral cortex. In both these studies, the number of subjects is small. Hence, we could not make conclusive deductions about whether the coronavirus directly affects the brain or the pathologies present are secondary effects of the physiological complications caused by the virus in the human body. Later, to diagnose the abnormalities in living patients’ brains, the research community used neuroimaging techniques to further investigate the preliminary findings of deformities. A descriptive review in by Gulko and colleagues has reported on multi-sequence MRI scans of 126 patients across seven countries and established the neurological pathologies caused by COVID-19, as observed in their surveyed research works [12]. This review includes observations of acute infarct, posterior reversible encephalopathy syndrome (PRES), leukoencephalopathy, cortical abnormality, and microhemorrhages in the different regions of the brain. Kremer and colleagues [13] conducted a retrospective study on 64 subjects’ neuroimaging data collected over multiple centers. This study reports several neurological aberrations in the accumulated data of COVID patients, with over 56% of the cohort having abnormalities. The significant pathologies seen by the authors were ischemic strokes and encephalitis. In other studies, loss of gray matter in the frontal lobe [14], arterial wall thickening [15],and inflammatory vascular pathologies [16] have also been reported in the MRI scans. In the reports of [17], researchers reported abnormal findings in brain computed tomography (CT)/MRI scans of 40% of the 35 COVID-19 patients during their hospitalization. Most common pathologies observed were microbleedings and restricted diffusion lesions. On the other hand, the arterial spin labeling (ASL) based study in [18] was carried out on 39 non-hospitalized COVID-19 recovered adults and compared with 11 healthy controls. This work revealed decreased cerebral blood flow (CBF) in the thalamus, orbitofrontal cortex, and basal ganglia.

The multi-sequence investigation by Griffanti and colleagues [19] showed lower gray matter density in frontal gyrus, lower gray matter metric in hippocampus, left superior division of the lateral occipital cortex from the structural imaging. The SWI exploration of the same study reported changes in the thalamus, and left hippocampus. In the SWI study of COVID patients on mechanical ventilation [20], Conklin and colleagues observed abnormal susceptibility signals in 11/16 patients whereas >10 lesions were reported in 50% of the subjects. These lesions were primarily identified in the corpus callosum region, subcortical, and deep white matter, with variable inclusion of the cerebellum and brainstem. In the case report of 68 year old male hospitalized with a diagnosis of coronavirus (SARS-CoV-2), hypointense areas were observed in bilateral thalamus, in the genu of the corpus callosum, and in the parietal juxtacortical white matter [21]. Another SWI study reported leukoencephalopathy and microbleeds in patients with COVID-19 [22]. To the best of our knowledge, no work on SWI based group-level analysis of COVID recovered patients has been reported in literature.

In this study, we attempt to understand the effects of COVID on the human brain using the SWI modality of MRI. The literature reports ischemic microvascular diseases occurring in COVID patients [22], which makes SWI an adequate modality for the analysis. However, there are limited literature reporting group-level results on the SWI analysis of COVID patients compared with respect to healthy controls (HCs). We started by recruiting a sample of patients who had been tested positive for the PCR test for COVID-19. We scanned these patients within six months of subsequent PCR negative status. We hypothesize that the COVID recovered subjects will develop alterations in the brain’s anatomy, which can be measured through susceptibility differences in various regions of brain, when compared

Mishra et al.: Preprint submitted to Elsevier
Page 2 of 11medRxiv preprint doi: https://doi.org/10.1101/2022.11.21.22282600 ; this version posted November 22, 2022. The copyright
holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license
to display the preprint in perpetuity.
It is made available under a CC-BY-NC-ND 4.0 International license .
SWI Analysis of COVID-19

to HCs. We expect that these surviving COVID-negative patients would have altered susceptibility values of brain tissues, compared to the HC group. Further we anticipate to observe a significant correlation between altered brain regions (gray or white matter) of COVID recovered subjects and self-reported fatigue scores. SWI modality of MR imaging can provide such information and enable us to test our hypothesis.

2. Materials and Methods

2.1. Participants

In this study MRI volumes of 46 (15 females) COVID-19 recovered patients, termed as COVID group in the scope of this work, and 30 (8 females) HCs were included with mean age of 34.67 ± 9.51 years for COVID group and 35.09 ± 11.37 years for HCs. These participants were recruited by the Indian Institute of Technology (IIT), Delhi, India, where they were imaged following all Institutional Review Board (IRB) guidelines and all patients gave informed consent prior to providing any behavioral or physical data.

2.2. Clinical Assessment

We have clinical details of 38 out 46 patients of the COVID group during their COVID-19 infection period and we also managed to gather post-COVID symptoms of 29 (12 females; mean age = 32.62 ± 8.19 years) out of the 46 patients. These 29 volunteers and 19 (5 females; mean age = 30.63 ± 9.79 years) random samples from the HC cohort also filled-up a form of fatigue analysis where they were asked to rate the effects of fatigue in different spheres (work, education, personal and social) of their daily lives from 0 to 5.

Most common symptoms during COVID-19 were reported to be fever (33/38), cough (26/38) and body ache (25/38). Loss of sense of smell (16/38) and taste (12/38) were also highly observed symptoms along with difficulty in breathing (20/38). The severity of these manifestations of COVID-19 varied among the subjects recruited for our scans. We had 18 patients who had been hospitalized and had severe COVID-19 whereas 5 of them reported moderate and the remaining 15 of them suffered from mild symptoms among the 38 patients whose details were made available to us.

On the other hand, 29 of 46 scanned patients who agreed to share their post-COVID symptoms showed a range of post-COVID symptoms. After negative RT-PCR test, these subjects reported to suffer from frequent body ache (achy muscle: 55.17% and achy joints: 44.83%), fatigue (72.41%), headache (44.83%) and hair loss (37.93%). Persistent breathing issues (13.8%) and bowel irritation (24.14%) were also detailed by some of the subjects. On the other hand, some specific complaints of lack of attention (48.27%), issues with memory (31.03%), and lack of sleep (41.38%) were common among these 29 patients. As mentioned earlier, these patients along with 19 HCs filled up a form to mention how the fatigue has affected different spheres of their respective lives: work, study, social and personal life. In this study, we mainly focused on the impact on the work sphere, where the average fatigue score in the sub-set of the COVID group was found to be 2.93/5 with standard deviation of 1.067 and that of the HC group was 0.63 ± 0.76.

2.3. Imaging

2.3.1. Anatomical MRI

T1-weighted images were acquired using a 3T GE scanner in 3D imaging mode with a fast BRAVO sequence. The scanner had a 32 channel head coil. The imaging parameters were inversion time (TI) = 450 ms; Flip angle = 12 ◦ , field of view (FOV) = 256 mm × 256 mm, number of slices = 152 (sagittal), slice thickness = 1.00 mm and spatial isotropic resolution of 1 mm.

2.3.2. Susceptibility-Weighted MRI

SWI scans were acquired using the same scanner in 3D imaging mode with a fast SWAN sequence. The imaging parameters were, echo time (TE) = 25.0 ms and low repetition time(TR); Flip angle = 15 ◦ and FOV = 224 mm × 224 mm; number of slices = 256, 256, and 196 in axial, coronal and sagittal plane respectively; slice thickness = 1.4 mm.

2.4. Data Pre-processing

For the SWI sequence, we have used FSL (https://fsl.fmrib.ox.ac.uk/fsl) software for data pre-processing. After dicom to nifti conversion, the brain extraction tool (BET) of FSL was used for skull stripping of SWI and anatomical brain images. The skull-stripped T1-weighted volumes were co-registered to the SWI images using inter-modality registration of FLIRT algorithm [23]. These co-registered T1-weighted anatomical images were Mishra et al.: Preprint submitted to Elsevier

Page 3 of 11medRxiv preprint doi: https://doi.org/10.1101/2022.11.21.22282600 ; this version posted November 22, 2022. The copyright
holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license
to display the preprint in perpetuity.
It is made available under a CC-BY-NC-ND 4.0 International license .

SWI Analysis of COVID-19

Table 1

Group level statistics on participant demographics in HC and COVID group. The included demographics are age, sex and fatigue scores (for 29 COVID and 19 HC subjects). Keys: p = p-value, stat = test statistics, t = two-sample t-test statistic, χ = Chi-Squared statistic, τ = Wilcoxon Rank Sum test score, M = Male, F = Female, HC: Healthy Controls Measures

Age (years)
Sex
Fatigue
p
0.8673
0.5815
1.178e-07
stat
-0.1677 (t)
0.3038 (χ)
5.297 (τ)
HC, mean (SD)
34.667 (9.50)
22M (8F)
0.632 (0.76)
COVID, mean (SD)
35.087 (11.37)
31M (15F)
2.93 (1.067)

then warped to the MNI reference template and the transformation matrices thus obtained were utilized to register the SWI images to the MNI space, resulting in a cascaded spatial registration of the individual image. Since, susceptibility-weighted images are not absolute values but relative in nature, we normalize them before carrying out the analysis.

We assumed a constant SWI value of the cerebrospinal fluid and normalized all registered individual images to the “water” value of the left and the right lateral ventricles [24], by using the Harvard-Oxford Subcortical Structural Atlas template [25].

2.5. Statistical Analysis

To determine the differences in participants’ demographics, we performed two sample t-test on age and chi-squared test for sex differences between the two groups. For voxel-wise assessment of COVID-19 vs HC on SWI modality, we performed unpaired two-sample t-test over the pre-processed volumes of COVID and HC groups. Significant clusters were identified and the main effect of interest from the corresponding contrast maps representing the difference in mean beta scores from two groups was obtained by thresholding the t-score map values that survived the corrected threshold.
To account for confounding effects that may explain some of the variances in the data, age and sex were also added as covariates of no interest. Cluster-based thresholding was applied at a height threshold of p unc < 0.01, with family-wise error (FWE) correction at p F W E < 0.05 for multiple comparisons. The cluster extent threshold (k E ) obtained from this step was used to generate corrected statistical maps for the contrasts with significant effects. The clusters obtained after surviving FWE for extent threshold, k E = 506 have been illustrated in Figure 1 with their respective cluster sizes and peak intensities.

In the fatigue study, the relationship of fatigue scores (in the work-sphere) with the COVID-19 recovered patients was analyzed. Initially, the reported scores of the COVID and HC cohorts were compared and a significant difference in fatigue levels was observed between the two groups. Since the fatigue scores deviated from normality (Shapiro Wilk: p < 0.05), we used Wilcoxon’s rank-sum test to assess the group difference between HCs and COVID-19 subjects. Subsequently, to evaluate the correlation of fatigue score in work-sphere with the susceptibility values of the subset of COVID group, we performed a multiple linear regression analysis. Here, the voxel-wise SWI value was considered the response variable, the fatigue score was regarded as the covariate of interest, and sex and age were the confounding variables. Regions with a significant correlation between susceptibility values and fatigue score were identified using cluster-based thresholding at height threshold p unc < 0.01 and FWE corrected at p F W E < 0.05, for multiple comparisons.

3. Results

Group analysis on susceptibility-weighted images highlighted three major clusters in COVID group when compared to HCs (Figure 1). The first two clusters (Figure 1 (a) and (b)) were observed bilaterally in the white matter near the orbitofrontal gyri and the gray/white matter junctions. The left cluster had a volume of 711 voxels and a peak value of 4.0341, while the right cluster covered 1586 voxels and had a maximum t-value of 4.0913. The clusters bilaterally covered the uncinate fasciculus tract and anterior parts of the inferior fronto-occipital fasciculus tracts of white matter (JHU White-Matter Tractography Atlas). In addition, the third cluster was observed in the midbrain region of the brain stem with a volume of 506 voxels and maximum intensity of 3.8679.

In the fatigue study, the COVID group demonstrated significantly higher fatigue levels compared to HC group (using Wilcoxon’s rank-sum test: τ = 5.297, p = 1.178e-07). To evaluate the correlation of fatigue scores with SWI values, multiple linear regression analysis yielded four significant clusters in COVID-19 patients when compared with HCs (Figure 2). The cluster shown in Figure 2 (a), with a size of 1637 voxels, showed a peak intensity of 5.9 in a region covering the forceps minor tract, the thalamic radiations, and the anterior cingulate and paracingulate gyrus

Mishra et al.: Preprint submitted to Elsevier
Page 4 of 11medRxiv preprint doi: https://doi.org/10.1101/2022.11.21.22282600 ; this version posted November 22, 2022. The copyright
holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license
to display the preprint in perpetuity.
It is made available under a CC-BY-NC-ND 4.0 International license .
SWI Analysis of COVID-19
(a)
`
(b)
(c)

Figure 1: Group analysis on susceptibility weighted imaging exhibiting higher SWI values (lower susceptibilities) in the COVID group when compared to healthy controls. Three significant clusters were found primarily in the white matter regions of pre-frontal cortex and in the brainstem. The clusters (a) and (b) are observed bilaterally in the cerebral white matter near the orbito-frontal gyrus whereas (c) lies in the midbrain region.

Table 2

Lists all significant clusters in SWI signal intensity between COVID and HC groups. Significant FWE corrected differences were observed for COVID versus HC in WM and brainstem regions, while the inverse comparison of HC versus COVID yielded no supra-threshold clusters. Keys: HC: Healthy Controls, FWE: Family-wise Error, WM: White Matter.

Peak MNI Coordinates
X
Y
Z COG MNI Coordinates
X
Y
Z
4.034 -28 29 3 -28
43
2
1586 4.09 34 42 -1 30
40
3
506 3.87 3 -19 -15 7
-28
-12
Cluster Index Number of Voxels Peak Intensity
1 711 2 3
Anatomic
Location
Left Cerebral White Matter
in frontal lobe
Right Cerebral White Matter
in frontal lobe
Midbrain
(Brainstem)

Table 3

Information related to the negatively correlated clusters of SWI with fatigue scores of work-sphere across the 29 subjects of COVID recovered group. Significant clusters were obtained in the frontal lobe, anterior cingulate cortex and brainstem. All four cluster showed negative correlation with the fatigue scores. No cluster was found with positive correlation.

Cluster Index Number of Voxels Peak Intensity
1
2
3
4 1637
469
595
1040 5.953
5.844
4.74
4.46
Peak
X
-12
-14
-3
-6
MNI Cordinates
Z
Y
14
41
2
51
-5
-8
-10
41
COG
X
-13
-14
-4
-8
MNI Cordinates
Z
Y
9
34
4
53
-5
-9
-11
43
Anatomic
Location
Left Anterior Cingulate Cortex
Left Superior Medial Frontal Gyrus

Midbrain

Medial Orbitofrontal Gyrus

on the left side. The second cluster (Figure 2 (b)) was also observed in the left extension of the forceps minor tract in white matter areas whereas the peak intensity is observed in the left superior medial frontal gyrus. It covered 469 voxels and had a peak intensity of 5.844. Figure 2 (c) highlights a cluster of 595 voxels in the region encompassing midbrain and the left thalamus with peak intensity of 4.745. Further, the fourth cluster was again observed in a region covering the left anterior cingulate gyrus, the medial orbitofrontal cortex, and the subcallosal gyrus (Figure 2 (d)). The cluster had a volume of 1040 voxels and a peak intensity of 4.4573. Moreover, the SWI values in all the above clusters exhibited negative correlation with the fatigue scores in work-sphere (Spearman rank-order correlation coefficient, ρ ∈ [−0.6014, −0.647]).

Mishra et al.: Preprint submitted to Elsevier
Page 5 of 11medRxiv preprint doi: https://doi.org/10.1101/2022.11.21.22282600 ; this version posted November 22, 2022. The copyright
holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license
to display the preprint in perpetuity.
It is made available under a CC-BY-NC-ND 4.0 International license .

SWI Analysis of COVID-19
 
(a) Cluster in left cerebral white matter, left anterior cingulate gyrus

Cluster size: 1637, Peak Intensity: 5.9
 
(c) Cluster in left Thalamus, midbrain

Cluster size: 595, Peak Intensity: 4.745
 
(b) Cluster in left cerebral white matter, left medial frontal gyrus

Cluster size: 469, Peak Intensity: 5.844


 
(d) Cluster in left anterior cingulate gyrus, left medial frontal cortex

Cluster size: 1040, Peak Intensity: 4.4573
.
Figure 2: Results of group-level Susceptibility Weighted Imaging (SWI) analysis demonstrating significantly negatively correlated clusters with self-reported fatigue scores of work-sphere across the COVID recovered group. Here, ρ stands for the Spearman rank-order correlation coefficient. The blue colored dots represent the COVID recovered patients. The Avg. values in the x-axis denote the residuals plus the mean SWI values of the cluster across subjects added back after linear regression. The linear plot (red) represents the least squares regression line, and the shaded pink area depicts the 95% confidence interval.

4. Discussions

The ability of SWI modality to detect abnormalities in the brain has been widely reported in literature, where it has been demonstrated as a useful imaging technique for detecting microvascular pathologies and cerebral ischemia in white matter [26] and gray matter [27] regions. This motivates the use of SWI in investigating the effect of COVID-19 on the brain. In this study, the susceptibility weighted MR images of 46 COVID-19 recovered subjects and 30 healthy controls were acquired and group differences in susceptibility in the brain were studied. In the COVID-19 recovered cohort, nature of COVID infection ranged from mild to severe as inferred from self-reported symptoms. In the group comparison study, we have found significant clusters of abnormal susceptibility in the brain stem as well as

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SWI Analysis of COVID-19

in the white matter regions of the inferior frontal lobe which extend to the cortical gray/white matter junctions. These clusters with high SWI values may be a result of microvascular pathologies, cerebral ischemia, or other edematous pathophysiological in the brain. Similar decreased susceptibility in the brain has been reportedly associated with mild cognitive impairment [24] and post traumatic epilepsy [28].

Susceptibility weighted imaging has been used to investigate the effect of acute COVID-19 infection on the brain. Conklin and colleagues [20] have used SWI and presented their observations based on case-reports of 16 patients who were admitted to the intensive care unit with severe COVID-19 and showed neurological deficits. The investigation has revealed cerebral microvascular lesions in deep white matter (9/16 patients), cortical regions (9/16 patients) and the brainstem (3/16 patients). Moreover, a study conducted in France by Helms and colleagues [29] on COVID-19 patients admitted in the ICU with acute respiratory distress syndrome has also reported white matter micro-haemorrhages in the frontal lobe using SWI. On similar lines, the clusters found in our group based study also suggest abnormalities in corresponding regions of the brain. While, both these discussed studies have reported their observations on critically-ill COVID-infected patients, we have conducted our analysis on patients who have recovered from different levels of severity of COVID-19 infection.

The present study has shown significant bilateral SWI hyperintensities in the frontal, more specifically, orbitofrontal region, damage to which has consistently been reported in other studies on COVID patients as well [30]. Structural analysis between COVID affected and healthy brains by [31] has shown reduced cortical thickness and tissue contrast in the orbito-frontal gyrus. A perfusion study [32] using ASL has reported decreased cerebral blood flow in the orbital and medial frontal cortices. Multiple studies on COVID patients using positron emission tomography (PET)/CT imaging have also consistently reported hypometabolism of Fludeoxyglucose (FDG) in the frontal lobe [33, 34, 35, 36].

Abnormalities in the midbrain region of the brainstem highlighted in this study have also been reported in multiple studies on COVID patients [37]. In critically ill patients, there have been reports of cerebral microhemorrhages in the brain stem [38]. These may be secondary effects of COVID caused by severe hypoxia in these patients. In another study [39], neuroinflammatory changes were observed in the brainstem while investigating neuropathological features of the COVID affected brains. A study on COVID patients using FLAIR imaging reported 4 out of 6 patients showing abnormalities in the brain stem [40]. A study on a 62 year old COVID patient using PET imaging also revealed hypometabolism of FDG in the brain stem area [41], while another study employing PET reported increased voxel weights in the same region [36]. Consistent reports of COVID-19 affecting similar regions of the brain strengthens the evidence of neurotropic behavior of the virus.

It was observed that several symptoms reported in COVID and Long COVID patients such as loss of smell and taste, insomnia, fatigue, cognitive problems, and mental health issues could be attributed to the regions of abnormal susceptibilities in our study. While the frontal lobe is generally associated with cognitive control functions, influencing attention and memory [42], the orbitofrontal gyrus is essentially the secondary cortex for taste and smell processing [43]. It is connected directly to the primary olfactory and taste cortices. The orbitofrontal cortex is also associated with regulation of mood and emotions. On the other hand, the inferior frontal gyrus is linked to cognitive control over memory [44]. The clusters found in the frontal lobe are primarily located in the WM areas, which overlap with the uncinate fasciculus tract. This tract connects the limbic and paralimbic regions with the orbito-frontal gyrus [45]. Functional and structural abnormalities in these regions have been consistently reported in studies on COVID patients [46]. The limbic, paralimbic and orbito-frontal regions play a central role in emotion processing. The decreased connectivity amongst these regions may be linked to mental health issues and reduced memory [47]. Susceptibility differences were also observed in the brainstem, which is vital for cardio-respiratory regulation in the body, and injuries to this area are long lasting in nature [48]. Specifically, abnormalities in the midbrain and pons have been connected to multiple symptoms of Long COVID like fatigue, insomnia, anxiety, depression, headaches, and cognitive problems [49]. These observations are notable and consolidate our findings in relation to the behavioral and cognitive manifestations of COVID-19. They also supplement our understanding of the nature of neurotropism exhibited by the virus.

In the fatigue study, four clusters were identified in the brain that showed a significant negative correlation of mean SWI values of the clusters with self-reported fatigue scores of work-sphere. These correlations can be interpreted as positive correlations of the score with average susceptibilities of the clusters [28]. The obtained Spearman rank-order correlation coefficients for these clusters ranged from -0.647 to -0.601, with p < 0.001 for all the clusters (refer to Figure 2). Similar to our study, areas in the brain have been found to be related to fatigue in other reports as well. A functional connectivity analysis [50] has reported a negative correlation between fatigue and connectivity in the precuneus network which involves the left superior parietal lobule, the superior occipital gyrus, the angular gyrus,

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SWI Analysis of COVID-19

and precuneus. A volumetric study [51] on the brain of COVID affected patients has reported fatigue to be positively correlated to volume of the left posterior cingulate cortex, precuneus, and the superior parietal lobule. Another study [18] on blood perfusion in non-hospitalized COVID patients has reported increased CBF in superior occipital and parietal regions along with decreased perfusion in the inferior occipital regions.

The neural correlates of fatigue have been studied extensively using neuroimaging methods [52]. Fatigue has been shown to be associated with higher functional connectivity between regions, including the bilateral superior frontal gyri, the anterior cingulate gyrus, precuneus, right angular gyrus and posterior central gyrus, supplementary motor area, posterior cingulate gyrus and the thalamus [53]. In patients with myalgic encephalomyelitis (ME)/chronic fatigue syndrome (CFS), studies using single-photon emission computerized tomography (SPECT) [54] have reported a significantly higher perfusion in the anterior cingulate region along with reduced perfusion in other areas. The thalamus has been known to show significant changes in association with fatigue. In addition to the thalamus, the midbrain, cingulate, amygdala, pons, and the hippocampus have been reported to show inflammation in cases of fatigue [55]. In older people, the thalamus has been reported to exhibit neural correlates of perceived physical and mental fatigability [56]. These regions show substantial coherence with the gray and white matter regions identified to be correlated with fatigue in this study.

In this study, we have identified multiple clusters in gray matter as well as white matter brain regions of COVID patients where average susceptibility values are positively correlated (or average SWI values values are negatively correlated) with self-reported fatigue scores. The anterior cingulate cortex (ACC) is commonly known to be responsible for emotions and attention processing. The dorsal parts of the ACC contribute to cognitive functions while the ventral regions are involved in emotional processing [57]. The role of medial pre-frontal cortex in memory consolidation and retrieval of long term memory is also established in literature [58]. In studies on patients with depression, there have been reports of abnormal metabolic activity in the subcallosal gyrus [59]. This region was also identified in our study and may be related to emotional processing issues reported in Long COVID. The forceps minor tract and the anterior thalamic radiations connect the right and left frontal lobes. These neural circuits play a vital role in attention control and damage to these tracts has been associated with vascular cognitive impairments [60]. It must be observed that the established roles of the regions identified in this study have strong agreement with commonly reported symptoms of Long COVID.

Using high resolution T1 weighted anatomical images from the same subjects, we have also reported significant gray matter volume alterations in multiple brain regions from the limbic system and basal ganglia obtained using Voxel-Based Morphometry (VBM) analysis in [51]. The results from the present report complements the findings of the aforementioned conventional T1-weighted MR study. Both these studies together provide a holistic view into the neurological sequelae of COVID-19 as they utilize different mechanisms to investigate distinct properties of the brain. They suggest that the SARS-CoV-2 virus has structural and compositional effects on the brain. These neuroimaging impacts and their behavioral manifestations are visible even after months of recovery from the infection.

In conclusion, our results demonstrate group-level effects in COVID recovered patients, showing susceptibility differences in the GM and WM regions of the frontal lobe and brainstem. These observations are consistent with results reported in single-patient case studies carried out on SWI volumes and group studies using other MRI modalities.

The present research will help the community to understand the impact of the SARS-CoV-2 virus on the human brain and hence propose some rehabilitative measures. In this study, we have also identified multiple clusters in gray matter, and white matter brain regions of COVID recovered patients where the average SWI values are negatively correlated with the self-reported fatigue scores. The roles of the clusters identified in this study have substantial agreement with commonly reported behavioral manifestations of post-COVID-19 fatigue. These brain regions have also been associated with fatigue in other neurodegenerative diseases. These deductions also indicate the viability of SWI modality for analysis of post-COVID symptoms. It also suggests an association of Long COVID with prolonged effects on the brain.

5. Limitations

While this study on the neurological basis of post-COVID symptoms using SWI has revealed significant abnormalities in susceptibilities of brain regions, there remain certain limitations that may be addressed to improve the impact and reliability of the study. Firstly, our study presents a group based analysis with a limited number of subjects which limits its transferability owing to unpredictable individual effects of each patient. Further, the application of

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SWI Analysis of COVID-19

SWI modality in clinical settings is slowly gaining relevance which hinders the immediate utility of our inferences for postulating the neuroimaging characteristics of post-COVID symptoms.

CRediT authorship contribution statement

Sapna S Mishra: Investigation, Methodology, Software, Formal Analysis, Resources, Data Curation, Writing -
Original draft preparation, review and editing.

Rakibul Hafiz: Investigation, Formal Analysis, Data Curation, Writing - Review and editing.

Rohit Misra: Investigation, Formal Analysis, Writing - Review and editing.

Tapan K. Gandhi: Conceptualization, Investigation, Resources, Supervision, Writing - Review and editing.

Alok Prasad: Data Curation, Writing - Review and editing.

Vidur Mahajan: Writing - Review and editing.

Bharat B. Biswal: Conceptualization, Resources, Project Administration, Supervision, Writing - Review and editing.

References

[1] World health organization (WHO,) coronavirus disease (COVID-19) dashboard, https://covid19.who.int/table, ????
[2] K. C. Ng Kee Kwong, P. R. Mehta, G. Shukla, A. R. Mehta, Covid-19, sars and mers: A neurological perspective, Journal of Clinical
Neuroscience 77 (2020) 13–16.
[3] M. A. Ellul, L. Benjamin, B. Singh, S. Lant, B. D. Michael, A. Easton, R. Kneen, S. Defres, J. Sejvar, T. Solomon, Neurological associations
of COVID-19, The Lancet Neurology 19 (2020) 767–783. Publisher: Elsevier.
[4] G. Tsivgoulis, L. Palaiodimou, A. H. Katsanos, V. Caso, M. Köhrmann, C. Molina, C. Cordonnier, U. Fischer, P. Kelly, V. K. Sharma, A. C.
Chan, R. Zand, A. Sarraj, P. D. Schellinger, K. I. Voumvourakis, N. Grigoriadis, A. V. Alexandrov, S. Tsiodras, Neurological manifestations
and implications of covid-19 pandemic, Therapeutic Advances in Neurological Disorders 13 (2020) 1756286420932036. PMID: 32565914.
[5] S. Sood, R. Gupta, J. Modi, J. Sharma, et al., Susceptibility weighted imaging: physics and clinical applications in neuroimaging at 3 tesla,
in: European Congress of Radiology, volume 2014, 2014.
[6] A. M. Halefoglu, D. M. Yousem, Susceptibility weighted imaging: clinical applications and future directions, World journal of radiology 10
(2018) 30.
[7] S. Mittal, Z. Wu, J. Neelavalli, E. M. Haacke, Susceptibility-weighted imaging: technical aspects and clinical applications, part 2, American
Journal of neuroradiology 30 (2009) 232–252.
[8] M. Akter, T. Hirai, Y. Hiai, M. Kitajima, M. Komi, R. Murakami, H. Fukuoka, A. Sasao, R. Toya, E. M. Haacke, M. Takahashi, T. Hirano,
Y. Kai, M. Morioka, K. Hamasaki, J. ichi Kuratsu, Y. Yamashita, Detection of hemorrhagic hypointense foci in the brain on susceptibility-
weighted imaging: Clinical and phantom studies, Academic Radiology 14 (2007) 1011–1019.
[9] J. P. Larsen, W. Britt III, D. Kido, B. L. B. Olson, B. A. Holshouser, W. M. Kirsch, Susceptibility-weighted magnetic resonance imaging in
the evaluation of dementia, Radiology Case Reports 2 (2007) 102.
[10] M.-H. Lee, D. P. Perl, G. Nair, W. Li, D. Maric, H. Murray, S. J. Dodd, A. P. Koretsky, J. A. Watts, V. Cheung, E. Masliah, I. Horkayne-Szakaly,
R. Jones, M. N. Stram, J. Moncur, M. Hefti, R. D. Folkerth, A. Nath, Microvascular injury in the brains of patients with covid-19, New England
Journal of Medicine 384 (2021) 481–483. PMID: 33378608.
[11] E. Song, C. Zhang, B. Israelow, A. Lu-Culligan, A. V. Prado, S. Skriabine, P. Lu, O.-E. Weizman, F. Liu, Y. Dai, K. Szigeti-Buck, Y. Yasumoto,
G. Wang, C. Castaldi, J. Heltke, E. Ng, J. Wheeler, M. M. Alfajaro, E. Levavasseur, B. Fontes, N. G. Ravindra, D. Van Dijk, S. Mane, M. Gunel,
A. Ring, S. A. Jaffar Kazmi, K. Zhang, C. B. Wilen, T. L. Horvath, I. Plu, S. Haik, J.-L. Thomas, A. Louvi, S. F. Farhadian, A. Huttner,
D. Seilhean, N. Renier, K. Bilguvar, A. Iwasaki, Neuroinvasion of sars-cov-2 in human and mouse brain, bioRxiv (2020).
[12] E. Gulko, M. Oleksk, W. Gomes, H. Mehta, P. Overby, F. Almufti, A. Rozenshtein, Mri brain findings in 126 patients with covid-19: Initial
observations from a descriptive literature review, AJNR. American journal of neuroradiology 41 (2020).
[13] S. Kremer, F. Lersy, M. Anheim, H. Merdji, M. Schenck, H. Oesterlé, F. Bolognini, J. Messie, A. Khalil, A. Gaudemer, S. Carré, M. Alleg,
C. Lecocq, E. Schmitt, R. Anxionnat, F. Zhu, L. Jager, P. Nesser, Y. T. Mba, G. Hmeydia, J. Benzakoun, C. Oppenheim, J.-C. Ferré, A. Maamar,
B. Carsin-Nicol, P.-O. Comby, F. Ricolfi, P. Thouant, C. Boutet, X. Fabre, G. Forestier, I. de Beaurepaire, G. Bornet, H. Desal, G. Boulouis,
J. Berge, A. Kazémi, N. Pyatigorskaya, A. Lecler, S. Saleme, M. Edjlali-Goujon, B. Kerleroux, J.-M. Constans, P.-E. Zorn, M. Mathieu,
S. Baloglu, F.-D. Ardellier, T. Willaume, J.-C. Brisset, S. Caillard, O. Collange, P. M. Mertes, F. Schneider, S. Fafi-Kremer, M. Ohana,
F. Meziani, N. Meyer, J. Helms, F. Cotton, Neurologic and neuroimaging findings in patients with covid-19, Neurology 95 (2020) e1868–
e1882.
[14] K. Duan, E. Premi, A. Pilotto, V. Cristillo, A. Benussi, I. Libri, M. Giunta, H. J. Bockholt, J. Liu, R. Campora, A. Pezzini, R. Gasparotti,
M. Magoni, A. Padovani, V. D. Calhoun, Alterations of frontal-temporal gray matter volume associate with clinical measures of older adults
with covid-19, Neurobiology of Stress 14 (2021) 100326.
[15] F. Lersy, M. Anheim, T. Willaume, A. Chammas, J.-C. Brisset, F. Cotton, S. Kremer, Cerebral vasculitis of medium-sized vessels as a possible
mechanism of brain damage in covid-19 patients, Journal of Neuroradiology 48 (2020).
[16] E. Keller, G. Brandi, S. Winklhofer, L. L. Imbach, D. Kirschenbaum, K. Frontzek, P. Steiger, S. Dietler, M. Haeberlin, J. Willms, F. Porta,
A. Waeckerlin, M. Huber, I. A. Abela, A. Lutterotti, C. Stippich, C. Globas, Z. Varga, I. Jelcic, Large and small cerebral vessel involvement
in severe covid-19, Stroke 51 (2020) 3719–3722.
[17] M. d. F. V. V. Aragao, M. de Carvalho Leal, O. Q. Cartaxo Filho, T. M. Fonseca, L. V. Aragao, M. R. V. C. Leao, M. A. Valenca, P. H. P.
de Andrade, J. P. V. Aragao, S. d. S. C. Neto, et al., Comparative study-the impact and profile of covid-19 patients who are indicated for
neuroimaging: Vascular phenomena are been found in the brain and olfactory bulbs, Medrxiv (2021) 2020–12.

Mishra et al.: Preprint submitted to Elsevier
Page 9 of 11medRxiv preprint doi: https://doi.org/10.1101/2022.11.21.22282600 ; this version posted November 22, 2022. The copyright
holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license
to display the preprint in perpetuity.
It is made available under a CC-BY-NC-ND 4.0 International license .
SWI Analysis of COVID-19

[18] W. S. Kim, X. Ji, E. Roudaia, J. J. Chen, A. Gilboa, A. Sekuler, F. Gao, Z. Lin, A. Jegatheesan, M. Masellis, M. Goubran, J. S. Rabin, B. Lam,
I. Cheng, R. Fowler, C. Heyn, S. E. Black, S. J. Graham, B. J. MacIntosh, Decreased cerebral blood flow in non-hospitalized adults who
self-isolated due to covid-19, medRxiv (2022).
[19] L. Griffanti, B. Raman, F. Alfaro-Almagro, N. Filippini, M. P. Cassar, F. Sheerin, T. W. Okell, F. A. Kennedy McConnell, M. A. Chappell,
C. Wang, C. Arthofer, F. J. Lange, J. Andersson, C. E. Mackay, E. M. Tunnicliffe, M. Rowland, S. Neubauer, K. L. Miller, P. Jezzard, S. M.
Smith, Adapting the uk biobank brain imaging protocol and analysis pipeline for the c-more multi-organ study of covid-19 survivors, Frontiers
in Neurology 12 (2021).
[20] J. Conklin, M. P. Frosch, S. S. Mukerji, O. Rapalino, M. D. Maher, P. W. Schaefer, M. H. Lev, R. Gonzalez, S. Das, S. N. Champion,
C. Magdamo, P. Sen, G. K. Harrold, H. Alabsi, E. Normandin, B. Shaw, J. E. Lemieux, P. C. Sabeti, J. A. Branda, E. N. Brown, M. B.
Westover, S. Y. Huang, B. L. Edlow, Susceptibility-weighted imaging reveals cerebral microvascular injury in severe covid-19, Journal of the
Neurological Sciences 421 (2021) 117308.
[21] L. Saitta, A. Molin, F. Villani, A. Insorsi, L. Roccatagliata, M. Inglese, M. Bassetti, P. Pelosi, L. Castellan, S. Gerevini, et al., Brain
microvascular occlusive disorder in covid-19: a case report, Neurological Sciences 41 (2020) 3401–3404.
[22] S. Agarwal, R. Jain, S. Dogra, P. Krieger, A. Lewis, V. Nguyen, K. Melmed, S. Galetta, Cerebral microbleeds and leukoencephalopathy in
critically ill patients with covid-19, Stroke 51 (2020) 2649–2655.
[23] M. Jenkinson, P. Bannister, M. Brady, S. Smith, Improved optimization for the robust and accurate linear registration and motion correction
of brain images, NeuroImage 17 (2002) 825–841.
[24] S. Haller, A. Bartsch, D. Nguyen, C. Rodriguez, J. Emch, G. Gold, K.-O. Lövblad, P. Giannakopoulos, Cerebral microhemorrhage and iron
deposition in mild cognitive impairment: Susceptibility-weighted mr imaging assessment, Radiology 257 (2010) 764–73.
[25] J. A. Frazier, S. Chiu, J. L. Breeze, N. Makris, N. Lange, D. N. Kennedy, M. R. Herbert, E. K. Bent, V. K. Koneru, M. E. Dieterich, S. M.
Hodge, S. L. Rauch, P. E. Grant, B. M. Cohen, L. J. Seidman, V. S. Caviness, J. Biederman, Structural brain magnetic resonance imaging of
limbic and thalamic volumes in pediatric bipolar disorder, American Journal of Psychiatry 162 (2005) 1256–1265. PMID: 15994707.
[26] D. F. Tate, M. Gusman, J. Kini, M. Reid, C. S. Velez, A. M. Drennon, D. B. Cooper, J. E. Kennedy, A. O. Bowles, E. D. Bigler, J. D. Lewis,
J. Ritter, G. E. York, Susceptibility Weighted Imaging and White Matter Abnormality Findings in Service Members With Persistent Cognitive
Symptoms Following Mild Traumatic Brain Injury, Military Medicine 182 (2017) e1651–e1658.
[27] J. Hu, Y. Yu, C. Juhasz, Z. Kou, Y. Xuan, Z. Latif, K. Kudo, H. T. Chugani, E. M. Haacke, Mr susceptibility weighted imaging (swi)
complements conventional contrast enhanced t1 weighted mri in characterizing brain abnormalities of sturge-weber syndrome, Journal of
Magnetic Resonance Imaging: An Official Journal of the International Society for Magnetic Resonance in Medicine 28 (2008) 300–307.
[28] H. A. Ferreira, A. Andrade, R. Manaças, P. Gonçalves-Pereira, Whole-brain voxel-based susceptibility-weighted imaging (swi) analysis:
normal cortical and subcortical values, and preliminary results in post-traumatic epilepsy, Cerebellum 14 (????) 6–7.
[29] J. Helms, S. Kremer, H. Merdji, M. Schenck, F. Severac, R. Clere-Jehl, A. Studer, M. Radosavljevic, C. Kummerlen, A. Monnier, et al.,
Delirium and encephalopathy in severe covid-19: a cohort analysis of icu patients, Critical Care 24 (2020) 1–11.
[30] S. Toniolo, F. Di Lorenzo, M. Scarioni, K. S. Frederiksen, F. Nobili, Is the frontal lobe the primary target of sars-cov-2?, Journal of Alzheimer’s
Disease 81 (2021) 75–81.
[31] G. Douaud, S. Lee, F. Alfaro-Almagro, C. Arthofer, C. Wang, P. McCarthy, F. Lange, J. L. Andersson, L. Griffanti, E. Duff, et al., Sars-cov-2
is associated with changes in brain structure in uk biobank, Nature 604 (2022) 697–707.
[32] M. Yus, J. A. Matias-Guiu, L. Gil-Martínez, N. Gómez-Ruiz, C. Polidura, M. Jorquera, C. Delgado-Alonso, M. Díez-Cirarda, J. Matías-
Guiu, J. Arrazola, Persistent olfactory dysfunction after covid-19 is associated with reduced perfusion in the frontal lobe, Acta Neurologica
Scandinavica (2022).
[33] M. Karimi-Galougahi, A. Yousefi-Koma, M. Bakhshayeshkaram, N. Raad, S. Haseli, 18fdg pet/ct scan reveals hypoactive orbitofrontal cortex
in anosmia of covid-19, Academic radiology 27 (2020) 1042.
[34] C. Delorme, O. Paccoud, A. Kas, A. Hesters, S. Bombois, P. Shambrook, A. Boullet, D. Doukhi, L. Le Guennec, N. Godefroy, et al., Covid-
19-related encephalopathy: a case series with brain fdg-positron-emission tomography/computed tomography findings, European journal of
neurology 27 (2020) 2651–2657.
[35] A. Kas, M. Soret, N. Pyatigoskaya, M.-O. Habert, A. Hesters, L. Le Guennec, O. Paccoud, S. Bombois, C. Delorme, The cerebral network of
covid-19-related encephalopathy: a longitudinal voxel-based 18f-fdg-pet study, European journal of nuclear medicine and molecular imaging
48 (2021) 2543–2557.
[36] J. A. Hosp, A. Dressing, G. Blazhenets, T. Bormann, A. Rau, M. Schwabenland, J. Thurow, D. Wagner, C. Waller, W. D. Niesen, et al.,
Cognitive impairment and altered cerebral glucose metabolism in the subacute stage of covid-19, Brain 144 (2021) 1263–1276.
[37] R. Manca, M. De Marco, P. G. Ince, A. Venneri, Heterogeneity in regional damage detected by neuroimaging and neuropathological studies
in older adults with covid-19: A cognitive-neuroscience systematic review to inform the long-term impact of the virus on neurocognitive
trajectories, Frontiers in aging neuroscience 13 (2021) 646908.
[38] L. Dixon, C. McNamara, P. Gaur, D. Mallon, C. Coughlan, F. Tona, W. Jan, M. Wilson, B. Jones, Cerebral microhaemorrhage in covid-19: a
critical illness related phenomenon?, Stroke and Vascular Neurology 5 (2020) e000652.
[39] J. Matschke, M. Lütgehetmann, C. Hagel, J. P. Sperhake, A. S. Schröder, C. Edler, H. Mushumba, A. Fitzek, L. Allweiss, M. Dandri, et al.,
Neuropathology of patients with covid-19 in germany: a post-mortem case series, The Lancet Neurology 19 (2020) 919–929.
[40] C. W. Freeman, J. Masur, A. Hassankhani, R. L. Wolf, J. M. Levine, S. Mohan, Covid-19-related disseminated leukoencephalopathy (crdl):
A retrospective study of findings on brain mri., AJR. American Journal of Roentgenology (2020).
[41] E. Guedj, M. Million, P. Dudouet, H. Tissot-Dupont, F. Bregeon, S. Cammilleri, D. Raoult, 18f-fdg brain pet hypometabolism in post-sars-cov-2
infection: substrate for persistent/delayed disorders?, European journal of nuclear medicine and molecular imaging 48 (2021) 592–595.
[42] D. Baldauf, R. Desimone, Neural mechanisms of object-based attention, Science 344 (2014) 424–427.
[43] E. T. Rolls, The functions of the orbitofrontal cortex, Brain and cognition 55 (2004) 11–29.

Mishra et al.: Preprint submitted to Elsevier
Page 10 of 11medRxiv preprint doi: https://doi.org/10.1101/2022.11.21.22282600 ; this version posted November 22, 2022. The copyright
holder for this preprint (which was not certified by peer review) is the author/funder, who has granted medRxiv a license
to display the preprint in perpetuity.
It is made available under a CC-BY-NC-ND 4.0 International license .
SWI Analysis of COVID-19

[44] M. Tops, M. A. Boksem, A potential role of the inferior frontal gyrus and anterior insula in cognitive control, brain rhythms, and event-related
potentials, Frontiers in psychology 2 (2011) 330.
[45] R. J. Von Der Heide, L. M. Skipper, E. Klobusicky, I. R. Olson, Dissecting the uncinate fasciculus: disorders, controversies and a hypothesis,
Brain 136 (2013) 1692–1707.
[46] P. Najt, H. L. Richards, D. G. Fortune, Brain imaging in patients with covid-19: A systematic review, Brain, behavior, & immunity-health 16
(2021) 100290.
[47] K. A. Lindquist, T. D. Wager, H. Kober, E. Bliss-Moreau, L. F. Barrett, The brain basis of emotion: a meta-analytic review, The Behavioral
and brain sciences 35 (2012) 121.
[48] H. Basinger, J. P. Hogg, Neuroanatomy, brainstem (2019).
[49] S. J. Yong, Persistent brainstem dysfunction in long-covid: a hypothesis, ACS chemical neuroscience 12 (2021) 573–580.
[50] R. Hafiz, T. K. Gandhi, S. Mishra, A. Prasad, V. Mahajan, B. H. Natelson, X. Di, B. B. Biswal, Assessing functional connectivity differences
and work-related fatigue in surviving covid-negative patients, bioRxiv (2022).
[51] R. Hafiz, T. K. Gandhi, S. Mishra, A. Prasad, V. Mahajan, X. Di, B. H. Natelson, B. B. Biswal, Higher limbic and basal ganglia volumes in
surviving covid-negative patients and the relations to fatigue, Neuroimage: Reports 2 (2022) 100095.
[52] R. Maksoud, S. du Preez, N. Eaton-Fitch, K. Thapaliya, L. Barnden, H. Cabanas, D. Staines, S. Marshall-Gradisnik, A systematic review
of neurological impairments in myalgic encephalomyelitis/chronic fatigue syndrome using neuroimaging techniques, PloS one 15 (2020)
e0232475.
[53] J. Boissoneault, J. Letzen, S. Lai, A. O’Shea, J. Craggs, M. E. Robinson, R. Staud, Abnormal resting state functional connectivity in patients
with chronic fatigue syndrome: an arterial spin-labeling fmri study, Magnetic resonance imaging 34 (2016) 603–608.
[54] K. B. Schmaling, D. H. Lewis, J. I. Fiedelak, R. Mahurin, D. S. Buchwald, Single-photon emission computerized tomography and
neurocognitive function in patients with chronic fatigue syndrome, Psychosomatic medicine 65 (2003) 129–136.
[55] Y. Nakatomi, K. Mizuno, A. Ishii, Y. Wada, M. Tanaka, S. Tazawa, K. Onoe, S. Fukuda, J. Kawabe, K. Takahashi, et al., Neuroinflammation
in patients with chronic fatigue syndrome/myalgic encephalomyelitis: an 11c-(r)-pk11195 pet study, Journal of Nuclear Medicine 55 (2014)
945–950.
[56] D. Angioni, K. Virecoulon Giudici, M. Montoya Martinez, Y. Rolland, B. Vellas, P. de Souto Barreto, Neuroimaging markers of chronic
fatigue in older people: a narrative review, Aging Clinical and Experimental Research 33 (2021) 1487–1492.
[57] G. Bush, P. Luu, M. I. Posner, Cognitive and emotional influences in anterior cingulate cortex, Trends in cognitive sciences 4 (2000) 215–222.
[58] D. R. Euston, A. J. Gruber, B. L. McNaughton, The role of medial prefrontal cortex in memory and decision making, Neuron 76 (2012)
1057–1070.
[59] C. Hamani, H. Mayberg, S. Stone, A. Laxton, S. Haber, A. M. Lozano, The subcallosal cingulate gyrus in the context of major depression,
Biological psychiatry 69 (2011) 301–308.
[60] M. Duering, N. Zieren, D. Hervé, E. Jouvent, S. Reyes, N. Peters, C. Pachai, C. Opherk, H. Chabriat, M. Dichgans, Strategic role of frontal white
matter tracts in vascular cognitive impairment: a voxel-based lesion-symptom mapping study in CADASIL, Brain 134 (2011) 2366–2375.

Mishra et al.: Preprint submitted to Elsevier
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[*/quote*]
« Last Edit: July 11, 2024, 08:26:23 PM by Pangwall »
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Löwenzian

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Re: Der Beweis ist erbracht: SarsCoV2 verursacht Hirnschäden!
« Reply #3 on: February 28, 2023, 12:13:39 PM »

Es gibt auch den Fulltext mit Bildern:

https://www.medrxiv.org/content/10.1101/2022.11.21.22282600v2.full-text

Da sieht man, welchen Matsch Covid im Kopf hinterläßt:



https://www.medrxiv.org/content/medrxiv/early/2022/12/05/2022.11.21.22282600/F1.large.jpg

[*quote*]
Figure 1:

Group analysis on susceptibility weighted imaging exhibiting higher SWI values (lower susceptibilities) in the COVID group when compared to healthy controls. Three significant clusters were found primarily in the white matter regions of pre-frontal cortex and in the brainstem. The clusters (a) and (b) are observed bilaterally in the cerebral white matter near the orbito-frontal gyrus whereas (c) lies in the midbrain region.
[*/quote*]




https://www.medrxiv.org/content/medrxiv/early/2022/12/05/2022.11.21.22282600/F2.large.jpg

[*quote*]
Figure 2:

Results of group-level Susceptibility Weighted Imaging (SWI) analysis demonstrating significantly negatively correlated clusters with self-reported fatigue scores of work-sphere across the COVID recovered group. Here, ρ stands for the Spearman rank-order correlation coefficient. The blue colored dots represent the COVID recovered patients. The Avg. values in the x-axis denote the residuals plus the mean SWI values of the cluster across subjects added back after linear regression. The linear plot (red) represents the least squares regression line, and the shaded pink area depicts the 95% confidence interval.
[*/quote*]
« Last Edit: July 11, 2024, 08:27:17 PM by Pangwall »
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Pangwall

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SARS-CoV-2 is associated with changes in brain structure in UK Biobank
« Reply #4 on: March 07, 2023, 07:44:30 PM »

Hier ist noch ein Artikel:


https://www.nature.com/articles/s41586-022-04569-5

[*quote*]
    Article
    Open Access
    Published: 07 March 2022

SARS-CoV-2 is associated with changes in brain structure in UK Biobank

    Gwenaëlle Douaud, Soojin Lee, Fidel Alfaro-Almagro, Christoph Arthofer, Chaoyue Wang, Paul McCarthy, Frederik Lange, Jesper L. R. Andersson, Ludovica Griffanti, Eugene Duff, Saad Jbabdi, Bernd Taschler, Peter Keating, Anderson M. Winkler, Rory Collins, Paul M. Matthews, Naomi Allen, Karla L. Miller, Thomas E. Nichols & Stephen M. Smith

Nature volume 604, pages 697–707 (2022)Cite this article

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Abstract

There is strong evidence of brain-related abnormalities in COVID-191,2,3,4,5,6,7,8,9,10,11,12,13. However, it remains unknown whether the impact of SARS-CoV-2 infection can be detected in milder cases, and whether this can reveal possible mechanisms contributing to brain pathology. Here we investigated brain changes in 785 participants of UK Biobank (aged 51–81 years) who were imaged twice using magnetic resonance imaging, including 401 cases who tested positive for infection with SARS-CoV-2 between their two scans—with 141 days on average separating their diagnosis and the second scan—as well as 384 controls. The availability of pre-infection imaging data reduces the likelihood of pre-existing risk factors being misinterpreted as disease effects. We identified significant longitudinal effects when comparing the two groups, including (1) a greater reduction in grey matter thickness and tissue contrast in the orbitofrontal cortex and parahippocampal gyrus; (2) greater changes in markers of tissue damage in regions that are functionally connected to the primary olfactory cortex; and (3) a greater reduction in global brain size in the SARS-CoV-2 cases. The participants who were infected with SARS-CoV-2 also showed on average a greater cognitive decline between the two time points. Importantly, these imaging and cognitive longitudinal effects were still observed after excluding the 15 patients who had been hospitalised. These mainly limbic brain imaging results may be the in vivo hallmarks of a degenerative spread of the disease through olfactory pathways, of neuroinflammatory events, or of the loss of sensory input due to anosmia. Whether this deleterious effect can be partially reversed, or whether these effects will persist in the long term, remains to be investigated with additional follow-up.

Main

The global pandemic of SARS-CoV-2 has now claimed millions of lives across the world. There has been an increased focus by the scientific and medical community on the effects of mild-to-moderate COVID-19 in the longer term. There is strong evidence for brain-related pathologies, some of which could be a consequence of viral neurotropism1,2,14 or virus-induced neuroinflammation3,4,5,15, including the following: neurological and cognitive deficits demonstrated by patients6,7, with an incidence of neurological symptoms in more than 80% of the severe cases8, radiological and post mortem tissue analyses demonstrating the impact of COVID-19 on the brain9,10, and the possible presence of the coronavirus in the central nervous system11,12,13.

In particular, one consistent clinical feature, which can appear before the onset of respiratory symptoms, is the disturbance in olfaction and gustation in patients with COVID-1916,17. In a recent study, 100% of the patients in the subacute stage of the disease were displaying signs of gustatory impairment (hypogeusia), and 86%, signs of either hyposmia or anosmia18. Such loss of sensory olfactory inputs to the brain could lead to a loss of grey matter in olfactory-related brain regions19. Olfactory cells—whether neuronal or supporting—concentrated in the olfactory epithelium are also particularly vulnerable to coronavirus invasion, and this seems to be also the case specifically with SARS-CoV-217,20,21,22. Within the olfactory system, direct neuronal connections from and to the olfactory bulb encompass regions of the piriform cortex (the primary olfactory cortex), parahippocampal gyrus, entorhinal cortex and orbitofrontal areas23,24.

Most brain imaging studies of COVID-19 to date have focussed on acute cases and radiological reports of single cases or case series based on computed tomography (CT), positron emission tomography (PET) or magnetic resonance imaging (MRI) scans, revealing a broad array of gross cerebral abnormalities,  including white matter hyperintensities, hypoperfusion and signs of ischaemic events spread throughout the brain, but found more consistently in the cerebrum9. Of the few larger studies focussing on cerebrovascular damage using CT or MRI, some have either found no clear marker of abnormalities in the majority of their patients, or importantly no spatially consistent pattern for the distribution of white matter hyperintensities or microhaemorrhages, except perhaps in the middle or posterior cerebral artery territories and the basal ganglia9. Imaging cohort studies of COVID-19, quantitatively comparing data across participants through automated preprocessing and co-alignment of images, are much rarer. For example, a recent PET cohort study focussing on correlates of cognitive impairment demonstrated, in 29 patients with COVID-19 at a subacute stage, the involvement of fronto-parietal areas revealed as fluorodeoxyglucose (18F-FDG) hypometabolism18. Another glucose PET study has shown bilateral hypometabolism in the bilateral orbital gyrus rectus and the right medial temporal lobe25. One multiorgan imaging study26 (and its brain-focussed follow-up27) in over 50 previously hospitalised patients with COVID-19 suggested modest abnormalities in T2* of the left and right thalami compared with matched controls. However, it remains unknown whether any of these abnormalities predates the infection by SARS-CoV-2. These effects could be associated with a pre-existing increased brain vulnerability to the deleterious effects of COVID-19 and/or a higher probability to show more pronounced symptoms, rather than being a consequence of the COVID-19 disease process.

UK Biobank offers a unique resource to elucidate these questions. With the data from this large, multimodal brain imaging study, we used for the first time a longitudinal design whereby participants had been already scanned as part of UK Biobank before being infected by SARS-CoV-2. They were then imaged again, on average 38 months later, after some had either medical and public health records of COVID-19, or had tested positive for SARS-CoV-2 twice using rapid antibody tests. Those participants were then matched with control individuals who had undergone the same longitudinal imaging protocol but had tested negative using the rapid antibody test or had no medical record of COVID-19. In total, 401 participants with SARS-CoV-2 infection with usable imaging data at both time points were included in this study, as well as 384 control individuals, matched for age, sex, ethnicity and time elapsed between the two scans. These large numbers may enable us to detect subtle, but consistent spatially distributed sites of damage associated with the infection, therefore underlining in vivo the possible spreading pathways of the effects of the disease within the brain (whether such effects relate to the invasion of the virus itself11,14,20, inflammatory reactions3,4,15, possible anterograde degeneration starting with the olfactory neurons in the nose, or through sensory deprivation19,28,29). The longitudinal aspect of the study aims to help to tease apart which of the observed effects between the first and second scans are probably related to the infection, rather than due to pre-existing risk factors between the two groups.

Our general approach in this study was therefore as follows: (1) use brain imaging data from 785 participants who visited the UK Biobank imaging centres for two scanning sessions, on average 3 years apart, with 401 of these having been infected with SARS-CoV-2 in between their two scans; (2) estimate—from each participant’s multimodal brain imaging data—hundreds of distinct brain imaging-derived phenotypes (IDPs), each IDP being a measure of one aspect of brain structure or function; (3) model confounding effects, and estimate the longitudinal change in IDPs between the two scans; and (4) identify significant SARS-CoV-2 versus control group differences in these longitudinal effects, correcting for multiple comparisons across IDPs. We did this for both a focussed set of a priori-defined IDPs, testing the hypothesis that the olfactory system is particularly vulnerable in COVID-19, as well as an exploratory set of analyses considering a much larger set of IDPs covering the entire brain. In both cases, we identified significant effects associated with SARS-CoV-2 infection primarily relating to greater atrophy and increased tissue damage in cortical areas directly connected to the primary olfactory cortex, as well as to changes in global measures of brain and cerebrospinal fluid volume.

Participants

UK Biobank has been releasing data from the COVID-19 re-imaging study on a rolling basis. As of 31 May 2021, 449 adult participants met the re-imaging study inclusion criteria (see the ‘Study design’ section of the Methods) and were identified as having been infected with SARS-CoV-2 based on either their primary care (GP) data, hospital records, results of their diagnostic antigen tests identified through record linkage to the Public Health datasets in England, Wales and Scotland, or two concordant antibody-based home lateral flow kit positive results. Of these 449 adult participants who had tested positive for SARS-CoV-2, a total of 401 had usable brain scans at both time points (Tables 1 and 2). For the 351 individuals for whom we had a diagnosis date based on their medical records or antigen tests, the time between diagnosis (a proxy for infection) and their second imaging scan was on average 141 days (Table 2 and Supplementary Fig. 1).

Table 1 Main demographics of the participants
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Table 2 Main clinical information for SARS-CoV-2 cases
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In total, 384 adult control participants met the inclusion criteria (see the ‘Study design’ section of the Methods) and had usable brain scans at both time points (Table 1). SARS-CoV-2 positive or negative status was identified using UK Biobank Showcase variable 41000.

Despite the original matched pairing of the SARS-CoV-2 cases and controls, their age distributions were slightly—albeit not statistically significantly—different, due to different patterns of missing/usable data (Extended Data Fig. 1). Note that the control group is on average slightly (albeit not significantly) older than the SARS-CoV-2-positive group, which would be expected to make any change between the two time points more difficult to detect in the group comparisons, rather than easier. Histograms of interval of time between the two scans in the two groups are shown in Extended Data Fig. 2.

The two groups showed no statistical differences across all 6,301 non-imaging phenotypes after false-discovery rate (FDR) or family-wise error (FWE) correction for multiple comparisons (lowest PFWE = 0.12, and no uncorrected P values survived FDR correction). However, owing to the stringent correction for multiple comparisons that this analysis imposes, we investigated further whether subtle patterns of baseline differences could be observed using dimension reduction with principal component analysis on all 6,301 variables, and using a separate principal component analysis focussed on baseline cognition (Supplementary Analysis 1). We found no principal components that differed significantly between the two groups when examining all of the non-imaging variables. With respect to cognitive tests, although no single cognitive score was significantly different at baseline between control individuals and participants who were later infected (future cases), we identified two cognitive principal components that were different (Supplementary Analysis 1). These subtle baseline cognitive differences suggest that the future cases had slightly lower cognitive abilities compared with the control individuals. Importantly, none of these principal components—cognitive or otherwise—could statistically account for the longitudinal imaging results (see the ‘Additional baseline investigations’ section below).

Through hospital records, we identified 15 participants in the SARS-CoV-2-positive group who had been hospitalised with COVID-19, including 2 who received critical care (Tables 2 and 3). These hospitalised patients were on average older, had higher blood pressure and weight, and were more likely to have diabetes and be men, compared with non-hospitalised cases (Table 3).
Table 3 Comparison between hospitalised versus non-hospitalised SARS-CoV-2 cases

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Hypothesis-driven results

The main case-versus-control analysis between the 401 SARS-CoV-2 cases and 384 controls (Model 1) on 297 olfactory-related cerebral IDPs yielded 68 significant results after FDR correction for multiple comparisons, including 6 that survived FWE correction (Table 4 and Fig. 1; a full list of the results is provided in Supplementary Table 1). Focussing on the top 10 most significant associations, 8 of these IDPs covered similar brain regions that are functionally connected to the primary olfactory cortex (see the ‘Hypothesis-driven approach’ section in the Methods), showing overlap especially in the anterior cingulate cortex, orbitofrontal cortex and insula, as well as in the ventral striatum, amygdala, hippocampus and parahippocampal gyrus30. We found a greater longitudinal increase in diffusion indices for the SARS-CoV-2 group in these tailored IDPs defining the functional connections with the frontal and temporal piriform cortex, as well as the olfactory tubercle and anterior olfactory nucleus (Table 4, Fig. 1 and Supplementary Table 1). The other two of the top 10 IDPs encompassed the left lateral orbitofrontal cortex and parahippocampal gyrus, both showing a greater reduction in grey matter thickness or intensity contrast over time for cases compared with controls (Table 4, Fig. 1 and Supplementary Table 1). For those significant IDPs, the average differences in percentage change between the two groups were moderate, ranging from around 0.2% to about 2%, with the largest differences observed in the volume of the parahippocampal gyrus and entorhinal cortex (Supplementary Table 1). Scatter and box plots, as well as plots showing the percentage changes with age are available for the top 10 longitudinal IDPs (Supplementary Information, Longitudinal Plots).

Table 4 Top 10 of the 68 significant results for the hypothesis-driven olfactory approach
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Fig. 1: The most significant longitudinal group comparison results from the hypothesis-driven approach.
figure 1



https://media.springernature.com/lw685/springer-static/image/art%3A10.1038%2Fs41586-022-04569-5/MediaObjects/41586_2022_4569_Fig1_HTML.png

a–d, The top four regions consistently showing longitudinal differences across the three models comparing SARS-CoV-2 cases and controls demonstrated either a significantly greater reduction in grey matter thickness and intensity contrast, or an increase in tissue damage (largest combined |Z| across Models 1–3). All three models pointed to the involvement of the parahippocampal gyrus (a), whereas Models 1 and 2 also showed the significant involvement of the left orbitofrontal cortex (b) and of the functional connections of the primary olfactory cortex (c, d). For each region, the IDP’s spatial region of interest is shown at the top left in blue, overlaid either on the FreeSurfer average inflated cortical surface, or the T1 template (left is shown on the right). For each IDP, the longitudinal percentage changes are shown with age for the two groups (control participants in blue, participants with infection in orange), obtained by normalising ΔIDP using the values for the corresponding IDPs across the 785 participants’ scans as the baseline. These are created using a 10-year sliding window average, with s.e.m. values shown in grey. The counter-intuitive increase in thickness in the orbitofrontal cortex in older controls has been previously consistently reported in studies of ageing57,58. The difference in cortical thickness, intensity contrast or diffusion indices between the two time points is shown for the 384 controls (blue) and 401 infected participants (orange), enabling a visual comparison between the two groups in a binary manner (therefore underestimating the effects estimated when modulating with age; see the ‘Main longitudinal model, deconfounding’ section in the Methods). The 15 hospitalised patients are indicated (red circles). ISOVF, isotropic volume fraction; OD, orientation dispersion. All y axes represent the percentage change.

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As secondary analyses, we found that significant longitudinal differences remained in the same set of significant brain regions that survived FDR or FWE correction when removing from the SARS-CoV-2 group those patients who had been hospitalised with COVID-19 (Model 2, 47 IDPs significant after FDR correction, 3 of which were also significant after FWE correction; Supplementary Table 1). Although fewer results were significant for the comparison between the 15 hospitalised patients and 384 control individuals (Model 3, 4 results were significant after FDR correction; Supplementary Table 1), probably due to the large reduction in sample size for this model, this additional group comparison showed effects in the same regions of the parahippocampal gyrus, orbital cortex and superior insula. Finally, we found no significant differences between the 15 hospitalised patients and 386 non-hospitalised SARS-COV-2 cases, probably due to the large reduction in sample size, but effect sizes and direction of these effects suggested stronger detrimental effects for the hospitalised cases in the orbitofrontal, insula, parahippocampal and frontal piriform cortex functionally connected brain regions (all |Z| ≥ 3, Model 4; Supplementary Table 1).

Across the three models comparing SARS-CoV-2 cases with controls (Models 1–3), the top 4 longitudinal differences were found in the functionally connected regions of the temporal piriform cortex (diffusion index: orientation dispersion) and of the olfactory tubercle (diffusion index: isotropic volume fraction), as well as in the parahippocampal gyrus (intensity contrast) and lateral orbitofrontal cortex (thickness) (largest combined |Z| across Models 1–3; Fig. 1). For these results across Models 1–3, the percentage of participants infected with SARS-CoV-2 who showed a greater longitudinal change than the median value in the control individuals was 56% for the regions connected to the temporal piriform cortex, 62% for the regions connected to the olfactory tubercle, 57% for the left parahippocampal gyrus and 60% for the left orbitofrontal cortex.

Although significant IDPs related to grey matter thickness were found, using our main case-versus-control analysis (Model 1), to be bilateral for both the anterior parahippocampal gyrus (perirhinal cortex) and entorhinal cortex, 10 out of the 11 remaining significant IDP were left-lateralised (Supplementary Table 1). Thus, we directly investigated left–right differences in the group with SARS-CoV-2 only for those significant IDPs, and found that the participants with an infection did not have a significantly greater reduction in grey matter thickness in the left hemisphere compared with in the right hemisphere (lowest Puncorr = 0.30).

Of the top 10 IDPs showing a longitudinal effect between first and second scans, none correlated significantly with the time interval between their infection and their second scan, in the participants who tested positive for SARS-CoV-2 for whom we had a date of diagnosis (n = 351; lowest Puncorr = 0.08).

Exploratory results

In total, 2,047 IDPs passed the initial tests of reproducibility (Extended Data Fig. 3) and data completeness. The main analysis (Model 1) revealed 65 significant longitudinal differences between the cases and controls that passed FDR correction, including 5 that were significant after FWE correction (Table 5; a complete list of reproducible IDPs and results is provided in Supplementary Table 1). Extended Data Figs. 4 and 5 show the QQ plot relating to the FDR thresholding, and a summary figure of Z-statistics results for all 2,047 IDPs grouped into different IDP classes.

Table 5 Top 10 of 65 significant results for the exploratory approach
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In particular, in this exploratory analysis covering the entire brain, 33 out of the 65 significant IDPs overlapped with the IDPs selected a priori for our hypothesis-driven approach of the involvement of the olfactory system. Moreover, we found significant longitudinal effects in global measures of volume, such as the cerebrospinal fluid (CSF) volume normalised for head size and the ratio of the volume of the segmented brain to the estimated total intracranial volume generated by FreeSurfer, as well as in the volume of the left crus II of the cerebellum, the thickness of the left rostral anterior cingulate cortex and diffusion index in the superior fronto-occipital fasciculus (Table 5 and Supplementary Table 1; examples are provided in Extended Data Fig. 6). For those significant IDPs, average differences in the percentage change between the two groups were moderate, ranging from around 0.2% to about 2% (except for two diffusion measures in the fimbria at >6%, due to the very small size of these regions of interest), with the largest differences observed in the volume of the parahippocampal gyrus and caudal anterior cingulate cortex (Supplementary Table 1). Scatter and box plots, as well as plots showing the percentage longitudinal changes with age are available for the top 10 longitudinal IDPs (Supplementary Information, Longitudinal Plots).

For the secondary analyses, when comparing the non-hospitalised cases with the controls (Model 2), the same general pattern emerged, albeit with a reduced number of significant results: one olfactory-related region, the functionally connected areas to the temporal piriform cortex, showed a significant longitudinal difference between the two groups in a diffusion index, as well as one global volume measure (CSF normalised), and a diffusion index in the superior fronto-occipital fasciculus (Model 2; 4 after FDR correction, 1 after FWE correction; Supplementary Table 1). Despite the considerably limited degrees of freedom in Models 3 and 4, many results remained significant after correction for multiple comparison, particularly for IDPs of cortical thickness, with an emphasis on the anterior cingulate cortex for Model 3 (66 results after FDR correction, 3 results after FWE correction), and a wide distribution across prefrontal, parietal and temporal lobes for Model 4 (29 FDR-corrected results; Fig. 2).

Fig. 2: Vertex-wise and voxel-wise longitudinal group differences in grey matter thickness and mean diffusivity changes.
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https://media.springernature.com/lw685/springer-static/image/art%3A10.1038%2Fs41586-022-04569-5/MediaObjects/41586_2022_4569_Fig2_HTML.png

Top, the main analysis (Model 1): the thresholded map (|Z| > 3) shows that the strongest, localised reductions in grey matter thickness in the 401 infected participants compared with the 384 controls are bilaterally in the parahippocampal gyrus, anterior cingulate cortex and temporal pole, as well as in the left orbitofrontal cortex, insula and supramarginal gyrus. Similarly, the strongest longitudinal differences in mean diffusivity (|Z| > 3, left is shown on the right) could be seen in the orbitofrontal cortex and anterior cingulate cortex, as well as in the left insula and amygdala (top). Bottom, secondary analysis (Model 4): the thresholded cortical thickness map (|Z| > 3) demonstrated longitudinal differences between the 15 hospitalised and 386 non-hospitalised SARS-CoV-2-positive cases in the orbitofrontal frontal cortex and parahippocampal gyrus bilaterally, right anterior cingulate cortex, as well as marked widespread differences in fronto-parietal and temporal areas, especially in the left hemisphere. We show the voxel-wise or vertex-wise longitudinal effects for illustrative purposes, avoiding any thresholding based on significance (as this would be statistically circular), similar to our previous analyses59.
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As many of the top exploratory and hypothesis-driven results included IDPs of cortical thickness and of mean diffusivity, we further conducted an exploratory visualisation of the vertex-wise thickness, and voxel-wise mean diffusivity longitudinal differences between the cases and controls ove